PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G116000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 185aa    MW: 19695 Da    PI: 8.3457
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G116000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.96.9e-132448125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+ Cr++L YPrGA++V+CalC+t+
  Gorai.009G116000.1 24 CSRCRNILLYPRGATNVCCALCNTI 48
                        9**********************97 PP

2zf-LSD142.79.3e-146387125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggCrtlL+Y+ GA+sVRC++C+ +
  Gorai.009G116000.1 63 CGGCRTLLMYTCGATSVRCSCCNII 87
                        **********************976 PP

3zf-LSD1474.1e-15101125125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Crt+L+YP+GApsV+Ca+C+ V
  Gorai.009G116000.1 101 CGHCRTTLMYPYGAPSVKCAVCHYV 125
                         **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.8E-122251IPR005735Zinc finger, LSD1-type
PfamPF069434.2E-112448IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-146090IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-116386IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-1298128IPR005735Zinc finger, LSD1-type
PfamPF069435.4E-14101125IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRFMKSSFTS FFTMIADMQS EVVCSRCRNI LLYPRGATNV CCALCNTITQ VPPPGMEMAQ  60
LVCGGCRTLL MYTCGATSVR CSCCNIINHV TASNPMAHIN CGHCRTTLMY PYGAPSVKCA  120
VCHYVTNVGT GNVRCPLPAS RPNATGTMPS TSTSQTVVVE NPMSVDESGK LVSNVVVGIT  180
TDKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446874.11e-118PREDICTED: protein LSD1-like isoform X1
RefseqXP_012446873.11e-118PREDICTED: protein LSD1-like isoform X1
SwissprotP940772e-70LSD1_ARATH; Protein LSD1
TrEMBLA0A0B0NU081e-114A0A0B0NU08_G
STRINGGLYMA08G13630.15e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53452650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-71LSD family protein